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E-cadherin
Models
Published Models
Principles
Single Genotype Circuit
Morpheus Model ID:
M2053
Introduction This model combines simple Notch signaling with the cellular Potts model (CPM), which drives cell sorting as a result of differential adhesion. Model details are contained in the reference Mulberry and Keshet, 2020.
N. Mulberry
,
L. Edelstein-Keshet
(Authors)
N. Mulberry
(Contributor)
DOI:10.1088/1478-3975/abb2dc
Models
Published Models
Principles
Three Layer Circuit
Morpheus Model ID:
M2052
Introduction This model combines simple Notch signaling with the cellular Potts model (CPM), which drives cell sorting as a result of differential adhesion. Model details are contained in the reference Mulberry and Keshet, 2020.
N. Mulberry
,
L. Edelstein-Keshet
(Authors)
N. Mulberry
(Contributor)
DOI:10.1088/1478-3975/abb2dc
Models
Published Models
Principles
Two Layer Circuit
Morpheus Model ID:
M2051
Introduction This model combines simple Notch signaling with the cellular Potts model (CPM), which drives cell sorting as a result of differential adhesion. Model details are contained in the reference Mulberry and Keshet, 2020.
N. Mulberry
,
L. Edelstein-Keshet
(Authors)
N. Mulberry
(Contributor)
DOI:10.1088/1478-3975/abb2dc
Models
Published Models
Cell Culture
MDCK EMT D
Morpheus Model ID:
M7124
Multiscale model of epithelial-mesenchymal transition (EMT) with intracellular TGFβ signaling circuit Introduction The growth factor TGFβ regulates the snail-zeb intracellular circuit that affects EMT by controlling the levels of E and N-cadherin expression.
N. Mukhtar
,
E. N. Cytrynbaum
,
L. Edelstein-Keshet
(Authors)
E. N. Cytrynbaum
,
Y. Xiao
(Contributors)
DOI:10.1016/j.bpj.2022.04.010
Models
Published Models
Cell Culture
MDCK EMT C
Morpheus Model ID:
M7123
Multiple models in epithelial-mesenchymal transitions (EMT) Introduction We model epithelial-mesenchymal transition (EMT) by first assembling an ODE model for intracellular Yes-associated protein (YAP) signalling and then embedding this single cell model within individual cells in a multiscale simulation.
N. Mukhtar
,
E. N. Cytrynbaum
,
L. Edelstein-Keshet
(Authors)
E. N. Cytrynbaum
,
Y. Xiao
(Contributors)
DOI:10.1016/j.bpj.2022.04.010
Models
Published Models
Cell Culture
MDCK EMT B
Morpheus Model ID:
M7122
Simulated sheet morphology for YAP knockdown (KD) and overexpression (OE) Introduction We model epithelial-mesenchymal transition (EMT) by first assembling an ODE model for intracellular Yes-associated protein (YAP) signalling and then embedding this single cell model within individual cells in a multiscale simulation.
N. Mukhtar
,
E. N. Cytrynbaum
,
L. Edelstein-Keshet
(Authors)
E. N. Cytrynbaum
,
Y. Xiao
(Contributors)
DOI:10.1016/j.bpj.2022.04.010
Models
Published Models
Cell Culture
MDCK EMT A
Morpheus Model ID:
M7121
Multiscale simulation of EMT by minimal signaling circuit Introduction We model epithelial-mesenchymal transition (EMT) by first assembling an ODE model for intracellular Yes-associated protein (YAP) signalling and then embedding this single cell model within individual cells in a multiscale simulation.
N. Mukhtar
,
E. N. Cytrynbaum
,
L. Edelstein-Keshet
(Authors)
E. N. Cytrynbaum
,
Y. Xiao
(Contributors)
DOI:10.1016/j.bpj.2022.04.010
Models
Published Models
Cell Culture
Human iPSC Wildtype Colony Growth
Morpheus Model ID:
M7671
Introduction Human induced pluripotent stem cells (hiPSCs) can be grown in cell culture where they self-organize spatial patterns. Libby et al. have employed inducible CRISPR interference-driven genetic perturbations to modulate mechanical cell properties like cell-cell adhesion and cortical tension.
A. R. G. Libby
,
D. Briers
,
I. Haghighi
,
D. A. Joy
,
B. R. Conklin
,
C. Belta
,
T. C. McDevitt
(Authors)
L. Brusch
(Contributor)
DOI:10.1016/j.cels.2019.10.008
Models
Published Models
Cell Culture
Human iPSC ROCK1-KD : Wildtype Colony Patterning
Morpheus Model ID:
M7673
Introduction Human induced pluripotent stem cells (hiPSCs) can be grown in cell culture where they self-organize spatial patterns. Libby et al. have employed inducible CRISPR interference-driven genetic perturbations to modulate mechanical cell properties like cell-cell adhesion and cortical tension.
A. R. G. Libby
,
D. Briers
,
I. Haghighi
,
D. A. Joy
,
B. R. Conklin
,
C. Belta
,
T. C. McDevitt
(Authors)
L. Brusch
(Contributor)
DOI:10.1016/j.cels.2019.10.008
Models
Published Models
Cell Culture
Human iPSC CDH1-KD : Wildtype Colony Patterning
Morpheus Model ID:
M7672
Introduction Human induced pluripotent stem cells (hiPSCs) can be grown in cell culture where they self-organize spatial patterns. Libby et al. have employed inducible CRISPR interference-driven genetic perturbations to modulate mechanical cell properties like cell-cell adhesion and cortical tension.
A. R. G. Libby
,
D. Briers
,
I. Haghighi
,
D. A. Joy
,
B. R. Conklin
,
C. Belta
,
T. C. McDevitt
(Authors)
L. Brusch
(Contributor)
DOI:10.1016/j.cels.2019.10.008
»
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